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Host-pathogen interactions

Host-pathogen interactions

Research Question

  • Understanding host-pathogen interaction relevant for virulence and immune response
  • Host-virus protein interactions
  • Functions of viral proteins
  • Molecular determinants of virulence

Research Gaps and Challenges

  • Identify changes in the viral genome/proteins affecting virulence/immune response (e.g. HA and NA and what impact this has on transmission)
  • Determine influence of virus on host cell molecular biology
  • Molecular changes required for virulence
  • Limitation to conduct long-term studies
  • Viral, host and environment factors that influence the risk of acquiring an HA multibasic cleavage site
  • Virus determinants ( other than MBCS ) of local replication and potential systemic spread in target species

Solution Routes

  • Gene expression in infected cells
  • Understand the significance in changes of EIV NA (drift and shift)
  • Identify mutations in the HA and non-HA genes that enhance transmission, shedding, and replication in different species
  • Infectivity, pathogenicity, and transmission studies with emerging viruses in different domestic and wild bird species
  • Long term pathogenesis studies to better characterize the dynamics of virus transmission in flocks
  • Effect of multiple IAV strain infections in pig host
  • Pathogenesis studies of new AIV subtypes to identify molecular mechanisms of adaptation/zoonotic risk
  • Mechanisms behind increased pathology and transmission observed with some H9N2 and H5N2 LPAI strains – also strains like H3N1
  • Better understanding of the increase in host range and virulence observed with H5Nx clade 2.3.4.4b viruses
  • Better understanding of how genetic reassortment in swine happened, causing circulation of multiple types
  • Better understanding of the propensity of this virus to reassort

Dependencies

  • Effect of environmental factors ( stress , ammonia , temperature , etc. ) on AIV transmission and pathogenesis (critical particularly for H9N2)
  • Knowledge on mechanisms of transmission and environmental persistence of the virus (see control strategies roadmap)
  • Effect of age, breed and physiological state (e.g. LPAI affects ability for egg production)
  • Understanding the role of microbiome and co-infections in virus pathogenicity expressions and vaccine efficacy
  • RESEARCH ROADMAP: CONTROL STRATEGIES -INFLUENZA V.1 23
  • Understanding the role of factors such as pregnancy and obesity on the susceptibility of breeding sows to SIV infection